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grimbough / biomaRt

R package providing query functionality to BioMart instances like Ensembl
https://bioconductor.org/packages/biomaRt/
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Possible SSL connectivity problems detected. #81

Closed rubie7109 closed 10 months ago

rubie7109 commented 1 year ago

listEnsembl() Possible SSL connectivity problems detected. Please report this issue at https://github.com/grimbough/biomaRt/issues Error in curl::curl_fetch_memory(url, handle = handle) : SSL peer certificate or SSH remote key was not OK: [uswest.ensembl.org] SSL certificate problem: certificate has expired

I see this issue has been noted and a resolution was attempted 2 days ago, however it appears the us-west mirror is still in reference. FYI I downloaded the biomaRt package today.

Thanks!

simfor commented 10 months ago

I still get the exact same error. So it seems like the query is still sent to the us-west mirror. I use biomart version 2.54.1

grimbough commented 10 months ago

The fix to this issue was made in biomaRt version 2.57.1 or newer, which is available in Bioconductor 3.17.

Unfortunately it's not possible to backport it to older versions of the package.