Open picsaver opened 2 years ago
I'm afraid I don't have much insight here. As you say, the linking looks fine and if the files exist I don't know why it wouldn't work.
There are a lot of compiler flags in your output that I'm not familiar with, so possibly one of them is causing behaviour I've not seen before.
I'll also point out that R 3.6.0 and the corresponding versions of Bioconductor are now quite old. I'm not able to update the version of rhdf5 that corresponds to that R version even if we figure out what the problem is.
I have the same problem but with the recent version of R: ─ Session info ─────── version R version 4.2.0 (2022-04-22) os Ubuntu 18.04.6 LTS system x86_64, linux-gnu ui RStudio
same using either BiocManager::install (1.30.17) and devtools::install_github (2.4.3):
devtools::install_github('grimbough/rhdf5') Downloading GitHub repo grimbough/rhdf5@HEAD ✔ checking for file ‘/tmp/RtmprZpRxG/remotes44076eee0636/grimbough-rhdf5-7fdd4e2/DESCRIPTION’ ... ─ preparing ‘rhdf5’: ✔ checking DESCRIPTION meta-information ... ─ cleaning src ─ running ‘cleanup’ ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘rhdf5_2.39.6.tar.gz’
Installing package into '/shared/apps/R/4.2.0/Library' (as 'lib' is unspecified) [1] "/shared/apps/R/4.2.0/Library" "/usr/local/lib/R/site-library"
@Jorges1000 Thanks for the report. Although they're similar error message I don't think the root cause is the same, so I've open a separate issue at #110. We can track your problem there.
Hi there,please help! I tried to install rhdf5 in my R-3.6, so I installed with rhdf5 archive file in root permission as following:
However, I had installed Rhdf5lib-1.8.0 in /usr/lib64/R/library/Rhdf5lib, and those .a files indeed in the path!
R sessionInfo as following
Regards !