I may have found a problem I couldn't resolve yet with the part2 - optimization of CENSO. Each time, the optimization for each conformer crashed whereas .censorc may has been properly configured.
Going into details, when reading the "opt-part2.out" file, a "SIGSEGV: segmentation fault - invalid memory reference" is always returned.
I found that there is a problem with the "program call" at the beginning of the "Calculation Setup" using the coord file :
The calculation just runs fine with a normal termination of xtb.
I don't know yet if I may have made a mistake somewhere or if the problem comes from a small omission in the XTB code.
Here the command I used to execute CENSO :
censo --input crest_conformers.xyz -solvent chcl3 -cactive off > censo.out
Here the specification of my system :
Ubuntu 22.04.2 LTS 64 bits
Intel(R) Core i9-9880H CPU @ 2.30 GHz x 16
32.0 Gio (RAM)
XTB version : 6.6.0
CREST version : 2.12
CENSO version : 1.2.0
ANMR version : 3.5.1
ORCA version : 5.0.4
Environment variables :
ulimit -s unlimited
My .censorc file, one of the input file of a conformer "opt.inp" and its output file "opt-part2.out" are given with the input file for ORCA "inp". The censo.out file is also joined in this issue.
Thank you for taking your time reporting this issue.
There is a known bug in xTB 6.6.0 with external Orca calculations (we should really release a bugfix release soon). You can either try an older xTB Version or use our bleed build.
Hello,
I may have found a problem I couldn't resolve yet with the part2 - optimization of CENSO. Each time, the optimization for each conformer crashed whereas .censorc may has been properly configured.
Going into details, when reading the "opt-part2.out" file, a "SIGSEGV: segmentation fault - invalid memory reference" is always returned.
I found that there is a problem with the "program call" at the beginning of the "Calculation Setup" using the coord file :
/path-to-xtb/bin/xtb coord --opt lax --orca -I opt.inp
When executing in a "CONF" folder this command-line, the same error is returned. Whereas, using,
/path-to-xtb/bin/xtb coord --opt lax --prog orca -I opt.inp
The calculation just runs fine with a normal termination of xtb.
I don't know yet if I may have made a mistake somewhere or if the problem comes from a small omission in the XTB code.
Here the command I used to execute CENSO :
censo --input crest_conformers.xyz -solvent chcl3 -cactive off > censo.out
Here the specification of my system :
XTB version : 6.6.0 CREST version : 2.12 CENSO version : 1.2.0 ANMR version : 3.5.1
ORCA version : 5.0.4
Environment variables : ulimit -s unlimited
My .censorc file, one of the input file of a conformer "opt.inp" and its output file "opt-part2.out" are given with the input file for ORCA "inp". The censo.out file is also joined in this issue.
censorc.txt
opt_inp.txt
opt-part2_out.txt
inp.txt
censo_out.txt