Currently only the V2K connection table format is supported for writing molfiles or SDFs, which will fail for 1000+ atoms or bonds due to the limited width of the fields. We should be more flexible and switch to the V3K format if we exceed the limit (or maybe just default to the new format).
Currently only the V2K connection table format is supported for writing molfiles or SDFs, which will fail for 1000+ atoms or bonds due to the limited width of the fields. We should be more flexible and switch to the V3K format if we exceed the limit (or maybe just default to the new format).