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groupschoof / AHRD

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
https://www.cropbio.uni-bonn.de/
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Could not find the matching Reference-Protein in AHRD's database #17

Closed jrtejero closed 5 years ago

jrtejero commented 5 years ago

Hello everyone,

Once I managed to solve my problem with java memory (due to a bad RegExp writting) y am facing another persistent error. Apparently, the AHRD's database is unable to provide me information about my proteins, giving this error:

We are sorry, an un-expected ERROR occurred: ahrd.exception.MissingAccessionException: Found Blast-Hits to reference protein 'P09406.1' but could not find the matching Reference-Protein in AHRD's persistent Database. Please update it accordingly. at ahrd.model.BlastResult.parseBlastDatabase(Unknown Source) at ahrd.model.BlastResult.readBlastResults(Unknown Source) at ahrd.controller.AHRD.parseBlastResults(Unknown Source) at ahrd.controller.AHRD.setup(Unknown Source) at ahrd.controller.AHRD.main(Unknown Source)

Could anybody help me?

Thanks in advance.

sanjaysingh765 commented 5 years ago

I think AHRD is specifically designed to work with Swiss-Prot, tremble and TAIR only. You may be used your blast database other than it which may be the reason behind this error.

jrtejero commented 5 years ago

Dear sanjay,

I solved this problem months ago. The issue was related with an unexplainable mistake in the protein headers from the swissprot database (probably, due to a failed downloading). Once I got the UNIPROTdatabase (downloaded from the official site: https://www.uniprot.org/downloads), a clean JAVA installation (I had to remove several older versions) and the last stable version of AHRD that I was told (https://github.com/groupschoof/AHRD/issues/16) I was able to annotate my data without any further problem.

Thanks for your help.

Regards,