Database update for gunc

grp-bork / gunc

Python package for detection of chimerism and contamination in prokaryotic genomes.

GNU General Public License v3.0

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Database update for gunc #43

Open quliping opened 7 months ago

quliping commented 7 months ago

GUNC is a useful software, but the database version of it seems too old. Is there any plan to update GUNC database? Or How to make a database by users themselves? I found that some one have also asked the question: https://github.com/grp-bork/gunc/issues/40#issue-2043115570

chrisgulvik commented 2 weeks ago

This issue could be closed now:

GTDB v214 is available here
Progenomes 3 is available here

wget https://swifter.embl.de/~fullam/gunc/gunc_db_gtdb214.dmnd.gz
wget https://swifter.embl.de/~fullam/gunc/gunc_db_progenomes3.dmnd.gz