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grp-bork / spire_contribute

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mapping of genome ID to study/run where it was recovered #4

Open wwood opened 11 months ago

wwood commented 11 months ago

Hi again,

I'm not able to find this information in any of the downloads, but presumably is known?

TIA

fullama commented 11 months ago

That.. is a very good point.. i will add it.

zoey-rw commented 10 months ago

Hi! I am looking for the same information: the link between genome IDs and their microntologies. It seems like it could be scraped from the website - is it already generated as a file somewhere?

Thanks!

zoey-rw commented 10 months ago

Just following up on this - is there a way to filter a list of genomes by the study or habitat?

rozwalak commented 10 months ago

Hi,

for me, it would also be helpful :)

Thanks in advance

fullama commented 9 months ago

hi all.. i have added a derived_from_sample column to the genome metadata file https://spire.embl.de/downloads i hope that covers what you needed?