Open nickschurch opened 2 years ago
setting the environmental variable from the R shell yields:
> py_discover_config()
/usr/bin/bash: /home/nick/anaconda3/envs/resas2016_rd1.2.3_o4.2/lib/libtinfo.so.6: no version information available (required by /usr/bin/bash)
python: /home/nick/anaconda3/envs/resas2016_rd1.2.3_o4.2/bin/python
libpython: /home/nick/anaconda3/envs/resas2016_rd1.2.3_o4.2/lib/libpython3.7m.so
pythonhome: /home/nick/anaconda3/envs/resas2016_rd1.2.3_o4.2:/home/nick/anaconda3/envs/resas2016_rd1.2.3_o4.2
version: 3.7.12 | packaged by conda-forge | (default, Oct 26 2021, 06:08:21) [GCC 9.4.0]
numpy: /home/nick/anaconda3/envs/resas2016_rd1.2.3_o4.2/lib/python3.7/site-packages/numpy
numpy_version: 1.21.5
NOTE: Python version was forced by RETICULATE_PYTHON
Bit weird to get the libtinfo.so.6
error by the rest seems ok.
I'm running your local scrip on WSL2 ubuntu 20.04 LTS. I first needed to set global write permissions on
/run
which then allows the script to run. Unfortunately it looks like the RETICULARE_PYTHON environmental variable is not being correctly set (I guess inrsession.sh
) because rstudio server reports the error:I also got a
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
error the first time I ran it. I thought that this might be the problem and that the conda env might not be being activated, but rstudio-server is finding the correct R. I ran
conda init
again anyway and it reported no changes to anything but I am also not getting that error any more so maybe thats sorted? Still getting the reticulate error though. Any ideas?