Open grst opened 5 years ago
The human cell atlas presents a pipeline using HISAT + RSEM: https://github.com/HumanCellAtlas/skylab/wiki/SmartSeq2-Pipeline-(v0.2.0)
To be consistent with dropSeqPipe I suggest using STAR + RSEM, but need to make sure to find the right parameters.
The human cell atlas presents a pipeline using HISAT + RSEM: https://github.com/HumanCellAtlas/skylab/wiki/SmartSeq2-Pipeline-(v0.2.0)
To be consistent with dropSeqPipe I suggest using STAR + RSEM, but need to make sure to find the right parameters.