gruenewald-lab / CGsmiles

Coarse-Grained Smiles (CGsmiles) for representing abitrarily complex molecules using a compact line notation
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[1] Squash opr #1

Closed fgrunewald closed 5 months ago

fgrunewald commented 6 months ago

This is the first draft of the squash bonding operator. The logic is to simply keep the atoms first and put a bond between them as per the usual workflow. In the end, they get squashed, and the fragment graphs as well as fragment IDs updated.