Overall Structure

[zkamvar]

Zach and I were thinking about overall structure of the workshop.

Activities should be based on data repositories that they download beforehand

Ways this could be formatted:

• two files: a data file in csv and an Rproj file.
• a data file in csv and a word document with a small report (rendered from an Rmd that we don't show them)

Each chapter should have a small activity associated with it.

Example: The data formatting chapter should have a data set for the participants to look at and evaluate what could be done better

This would be a short section at the end of each section for applying the skills they learned

• [x] Data Formatting: data set exercise -- compare and contrast two formats of the same data set
• [x] Markdown: Write a section of the word document (introduction)
• [x] RMarkdown: Load packages; import the data; do analysis; show session information --- AUDPC data
• [x] Break
• [x] Git: No activity
• [x] GitHub: Create Accout; Fork Data Repository; make README.md in that repository (or upload)
• [x] Exercise: Replicating analysis (15min) --- P. infestans data
• [x] Organizing Reproducible Research No activity

[zachary-foster]

This is done now.