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grunwaldlab / Reproducible-science-in-R

This site provides information on conducting reproducible science using the R language.
http://grunwaldlab.github.io/Reproducible-science-in-R/
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More edits #33

Closed zachary-foster closed 8 years ago

zachary-foster commented 8 years ago

Sorry for the late changes, but I found a few errors and wanted to make some minor changes to make teaching the RMarkdown section easier. @zkamvar: can you rebuild the site after merging?

zkamvar commented 8 years ago

I can do that.

I've been running into issues with extra directories using quiltr and I'm trying the RMarkdown way of doing things: http://rmarkdown.rstudio.com/rmarkdown_websites.html

I'll issue a pull request when I'm ready.

zachary-foster commented 8 years ago

Ok, sounds good. Are they temp directories in your home directory? I have noticed that bug occasionally, but its hard to find.

zkamvar commented 8 years ago

The culprits are usually

.Rproj.user/ content

On Jul 27, 2016, at 11:55 , Zachary Foster notifications@github.com wrote:

Ok, sounds good. Are they temp directories in your home directory? I have noticed that bug occasionally, but its hard to find.

— You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub https://github.com/grunwaldlab/Reproducible-science-in-R/pull/33#issuecomment-235684241, or mute the thread https://github.com/notifications/unsubscribe-auth/ADeIlnoBNGCfjyJRRQopFXXpU4pIQgBwks5qZ6mRgaJpZM4JWgLx.

zkamvar commented 8 years ago

Hey Zach,

check out https://github.com/grunwaldlab/Reproducible-science-in-R/tree/test-gh-pages https://github.com/grunwaldlab/Reproducible-science-in-R/tree/test-gh-pages

and see if you're okay with this. I can easily switch to putting the TOC at the top, but I wanted to explore this way first.

Zhian

On Jul 27, 2016, at 12:00 , Zhian Kamvar kamvarz@science.oregonstate.edu wrote:

The culprits are usually

.Rproj.user/ content

On Jul 27, 2016, at 11:55 , Zachary Foster <notifications@github.com mailto:notifications@github.com> wrote:

Ok, sounds good. Are they temp directories in your home directory? I have noticed that bug occasionally, but its hard to find.

— You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub https://github.com/grunwaldlab/Reproducible-science-in-R/pull/33#issuecomment-235684241, or mute the thread https://github.com/notifications/unsubscribe-auth/ADeIlnoBNGCfjyJRRQopFXXpU4pIQgBwks5qZ6mRgaJpZM4JWgLx.