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grunwaldlab / analysis_of_microbiome_community_data_in_r

This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/
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Need CRAN versions of all packages #12

Open knausb opened 6 years ago

knausb commented 6 years ago

The packages metacoder and taxa currently require GitHub versions for the site to build properly. Before the workshop this site should be able to build with CRAN versions and no GitHub versions should be required.

Neato-Nick commented 6 years ago

Specifically, the write_phyloseq branch of metacoder contains the functions needed for the workshop. Additionally, will the glossary package need to be on CRAN before the workshop, or is that one OK just as a github package?

zachary-foster commented 6 years ago

I think all the code presented needs to run with CRAN versions of taxa and metacoder, not necessarily building the website, although building the website is a good test of that. I don't plan on submitting the glossary package to CRAN anytime soon. It is very rough right now