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grunwaldlab / metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
http://grunwaldlab.github.io/metacoder_documentation
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Multiple heat tree comparisons against a single reference treatment #292

Open marcelladane opened 4 years ago

marcelladane commented 4 years ago

It would be very good if we could define one specific condition as control and plot all against this single condition. I couldn´t find a way in the documentation, is it possible? It is especially important when testing interventions such as the fecal transplant effect or medication effects on the microbiome.

=)

zachary-foster commented 4 years ago

Yea, thats a good idea. There is no function to do that right now, but you can do it by making each comparison its own plot using the same color/size settings, store the plots in a list, and paste them together using a package like cowplot. Let me know if want more info on how you can do that. I will leave this issue open to remind me to make a function to do this.

marcelladane commented 4 years ago

Dear Zachary, I understood what you mean. I will try this version. And I am glad you liked the idea, the package is great, so I will really appreciate to have his option running.

Best regards Marcela

On Tue, 8 Sep 2020, 20:04 Zachary Foster, notifications@github.com wrote:

Yea, thats a good idea. There is no function to do that right now, but you can do it by making each comparison its own plot using the same color/size settings, store the plots in a list, and paste them together using a package like cowplot. Let me know if want more info on how you can do that. I will leave this issue open to remind me to make a function to do this.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/grunwaldlab/metacoder/issues/292#issuecomment-689045069, or unsubscribe https://github.com/notifications/unsubscribe-auth/AG6CE5TJ2FNZKPR3FQOLV7TSEZW23ANCNFSM4QYF3WYQ .

zachary-foster commented 4 years ago

Thank you!