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grunwaldlab / metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
http://grunwaldlab.github.io/metacoder_documentation
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Metabolic pathway packages/script recommendations #321

Open catherineel opened 2 years ago

catherineel commented 2 years ago

Would you happen to have any recommendations for workshops/packages for analysing changes in metabolic pathways to complement your graphs?

Your workshops are so detailed and easy to follow, so wasn't sure if you also had something.

zachary-foster commented 2 years ago

I don't have experience with metabolic pathway analysis. The closest thing I have done is gene ontology terms from RNA-seq data, but I don't know much even about that yet. Sorry!

I am glad you found the workshops easy to follow. Hopefully we can make some more eventually.

catherineel commented 2 years ago

That's okay, thank you so much! Looking forward to more of your future workshops! :)

ChiLiubio commented 2 years ago

Hi, @catherineel The microeco package and its tutorial may be useful resources for your metabolic pathways analysis.

catherineel commented 2 years ago

Oh wonderful, thank you @ChiLiubio!!