gsautter / goldengate-imagine

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MaterialsCitation: GenBankNummer: feature request #416

Open myrmoteras opened 6 years ago

myrmoteras commented 6 years ago

Would it be possible to add an additional annotation element "GenBankCode" and if possible find a way to automatically discover and code it?

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The GenBankCode or GenBankAccession are normally in the form of MF185704, i.e. 2 capital letters and 6 numbers. e.g. https://www.ncbi.nlm.nih.gov/nucleotide/EF610896

it resolves to therespective genbank submission

here are some more https://www.elsevier.com/authors/author-services/research-data/data-base-linking/supported-data-repositories#GenBank

gsautter commented 6 years ago

The "GenBank accession" prefix should pretty much nail it, I guess ... though I tend to doubt that that's always given as nicely and cleanly.

And even the plain "two-capital-letter-six-digits" pattern should be pretty easy to model. However, for the sake of precision, I'd like to clarify two things:

myrmoteras commented 5 years ago

I am not sure about the first two letters. need to read through the documentation, as well as regarding 0