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gsneha26 / SegAlign

A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
MIT License
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/usr/local/bin/run_segalign: line 60: segalign: command not found #61

Open osyafinkelberg opened 11 months ago

osyafinkelberg commented 11 months ago

Dear Sneha,

I have the same issue as in #51. And I was not able to find a solution.

When I am running

run_segalign --help

as was suggested in #51, I receive the following error: /usr/local/bin/run_segalign: line 60: segalign: command not found

Thank you very much!

richard-burhans commented 7 months ago

If you use conda, you can install SegAlign using my bioconda recipe. You would use a command like the following:

conda create --name segalign --channel conda-forge --channel bioconda --channel defaults --override-channels --strict-channel-priority --solver libmamba --yes segalign-full