Output file size not correct

gsneha26 / SegAlign

A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043

MIT License

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Open gotouerina opened 6 months ago

gotouerina commented 6 months ago

Hi professor,

I used SegAlign on GPU V100 32G with 30 CPU, aligning two pika genome (size > 2G), and I get an 800G MAF format output files.

What's this going on ? Is this result correct?

richard-burhans commented 6 months ago

Did you happen to pass SegAlign the --scoring option? If so, my PR should fix this issue.