When using pygsp2 and plotting in 3D, the axis doesn't autoscale. This problem is not present in pygsp so there must be some problem with the plot method of pygsp2. What we usually use to fix this is normalizing the position matrix, but this might be innecesary if the plot method is fixed.
For reference, the same graph using pygsp and pygsp2.
Also, this warning appears: UserWarning: No data for colormapping provided via 'c'. Parameters 'vmin', 'vmax' will be ignored
sc = ax.scatter(*G.coords.T,
When using pygsp2 and plotting in 3D, the axis doesn't autoscale. This problem is not present in pygsp so there must be some problem with the plot method of pygsp2. What we usually use to fix this is normalizing the position matrix, but this might be innecesary if the plot method is fixed. For reference, the same graph using pygsp and pygsp2.