Open tamaraprieto opened 4 years ago
I have taken a closer look at the results and I guess the program has not finished properly as the maximum proportion of clones assigned to each sample does not reach 1. In fact, it is close to 0.66 in all the samples. Do you think it may be something related to my input? Thanks
Sorry for very late response. You do not need to worry about the message. Results should be fine. The total clone frequencies may not become 1, because (1-Total)=Normal cell frequency.
Hi,
I was running the program using this command:
python clonefinder.py snv ${WORKDIR}/Input2.txt
And the input file looks like this (but it has and 1815 sites and 283 samples in total):
I am getting the following error, the programs fails but I get the output anyway:
tumor genotype that was decomposed was hit in different tumor: failed decomposition Run time: 0:29:27.664878
Should I worry about it? Thanks in advance!