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gstecher / CloneFinderAPI

API for the Clone Finder application
MIT License
2 stars 7 forks source link

Runs forever! #6

Open ruhollah2 opened 1 year ago

ruhollah2 commented 1 year ago

The process appears to be running indefinitely. My input file contains roughly 57,000 mutations from 15 tumors. CloneFinder has been running over 72 hours, but no result yet.

I'm unsure what the issue might be or if there is a limit to the number of lines in the input file. What course of action should I take?

SayakaMiura commented 1 year ago

It seems that the number of mutations is very large. Low-quality SNVs (small number of read counts) may be removed. Also, SNVs found in all tumors may be removed from the analysis, and you may manually insert them at the trunk after the CloneFinder analysis.