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gt1 / biobambam2

Tools for early stage alignment file processing
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csi indexing of BAM file #65

Closed keiranmraine closed 6 years ago

keiranmraine commented 6 years ago

BAM files can be indexed as bai or csi. Will bamsort generate a valid csi index if indexfilename=file.bam.csi?

gt1 commented 6 years ago

Hi Keiran,

I have added this in the latest version. Could you please let me know if this works for you?

Thanks German

keiranmraine commented 6 years ago

Yes it works as expected, thanks

gt1 commented 6 years ago

Thanks for checking.