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gt1
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biobambam2
Tools for early stage alignment file processing
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Input and Output Files
#29
markmcdowall
opened
8 years ago
0
Query: does bb2 support new bgzip fasta reference?
#28
keiranmraine
closed
8 years ago
2
bamtofastq - put specified tags in fastq comment if present
#27
keiranmraine
closed
8 years ago
1
bamcollate2 - errors but returns 0 exit code
#26
keiranmraine
closed
8 years ago
7
bamcollate2 - split bam by readgroup
#25
keiranmraine
opened
8 years ago
2
MC:Z: tag
#24
drmjc
closed
8 years ago
4
bamsormadup hangs on specific bam
#23
mpinese
closed
8 years ago
5
Bamadapterfind Threaded Speed-Up
#22
whitwham
closed
8 years ago
8
Added a PG line for bam12auxmerge.
#21
whitwham
closed
8 years ago
2
bamcat syscall error
#20
guillermo-carrasco
closed
8 years ago
4
alternative to libmaus2?
#19
estolle
closed
8 years ago
1
bamtofastq gets confused over near-identical read names
#18
mjafin
closed
8 years ago
4
bamdownsamplerandom - bam vs cram
#17
keiranmraine
closed
8 years ago
9
default: extend output file name
#16
keiranmraine
closed
8 years ago
7
bamdownsamplerandom - sort order issues with cram input
#15
keiranmraine
closed
8 years ago
2
Improper header parsing resulting in incorrect 'Malformed SAM header line:' error message
#14
adamstruck
closed
8 years ago
2
bamadapterfind: clip default '-h' vs man
#13
keiranmraine
closed
8 years ago
1
Feature request: add rmdup capability to bamsort
#12
alanhoyle
closed
8 years ago
1
bamsort - SO:coordinate not being added to @HD line
#11
amatchan
closed
8 years ago
2
indexing fails on sparse BAMs
#10
keiranmraine
closed
8 years ago
3
curl in binary release
#9
keiranmraine
closed
8 years ago
2
Set variable to identify programs to iRODS.
#8
whitwham
closed
8 years ago
0
build directories leaked in .la files in binary tarball
#7
dkj
closed
9 years ago
1
bamsort - multiple unsorted SAM input fails when no records
#6
keiranmraine
closed
8 years ago
5
Improve the cigar handling of ClipAdapters.
#5
whitwham
closed
9 years ago
8
Stopped adapter tags transferral to secondary and supplementary reads
#4
whitwham
closed
9 years ago
1
question about bamtofastq
#3
hurleyLi
closed
9 years ago
1
bammerge - option for output file not documented
#2
keiranmraine
closed
8 years ago
1
Mark duplicate change
#1
whitwham
closed
9 years ago
0
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