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gtDMMB / ConsensusStems

Scripts implementing ConsensusStems, a novel method that clusters profiles of Boltzmann sampels to predict consensus stems for unaligned sequences
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Incorrect search space during 2D DBSCAN #2

Open hbanoscervantes opened 4 years ago

hbanoscervantes commented 4 years ago

The function rangeQuery2 is incorrectly looking at the neighbors using the manhattan distance. A corrected version has is attached (substitute it in ConsensusStems.pl) rangeQuery2.txt

hbanoscervantes commented 4 years ago

It seems that when correcting the search space the choice of epsilon on the 2D DBSCAN is not enough to get the expected results. For now, a choice of twice the current epsilon seems to work (i.e multiply by 4 instead of 2 from the 1D to the 2D DBSCAN).