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gterrierz / CellProfiler

MSC phenotype analysis
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CellProfiler classify objects error #1

Open gterrierz opened 5 years ago

gterrierz commented 5 years ago

Having issues with Classify Objects module. When in hidden mode, the analysis runs fine. When one view mode the following error message comes up;

"Error while processing ClassifyObjects: boolean index did not match indexed array along dimension 0; dimension is 'x+1' but corresponding boolean dimension is 'x'. Do you want to stop processing?"

X is always different depending on the image i'm analysing.

Any help would be much appreciated as I would really like to view the output image in the ClassifyObjects module format, without having to view it in another module such as Crop.

gterrierz commented 5 years ago

The code in case it's useful: Failed to run module ClassifyObjects Traceback (most recent call last): File "CellProfiler\cellprofiler\gui\pipelinecontroller.py", line 2926, in do_step File "CellProfiler\cellprofiler\modules\classifyobjects.py", line 561, in display File "CellProfiler\cellprofiler\modules\classifyobjects.py", line 668, in display_two_measurements IndexError: boolean index did not match indexed array along dimension 0; dimension is 6 but corresponding boolean dimension is 5