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gtrichard / deepStats

deepStats: a stastitical toolbox for deeptools and genomic signals
GNU General Public License v3.0
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requirement #6

Closed LeilyR closed 5 years ago

LeilyR commented 5 years ago

could you please add the requirement file for the dependencies.

gtrichard commented 5 years ago

Hum why do you need it ? Conda is taking care of it. Otherwise you can follow the guide for the notebooks.

LeilyR commented 5 years ago

I was getting some package error. Can tell you details on Monday

LeilyR commented 5 years ago

dsCompareCurves -h Error: package or namespace load failed for ‘tidyverse’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/data/processing3/leily/miniconda3/envs/deepstats/lib/R/library/haven/libs/haven.so': /data/processing3/leily/miniconda3/envs/deepstats/lib/R/library/haven/libs/haven.so: undefined symbol: libiconv Execution halted

gtrichard commented 5 years ago 
conda create -c bioconda -c conda-forge -n deepStats python=3.7 deepStats
conda activate deepStats
dsCompareCurves -h

It did the trick.