What steps will reproduce the problem?
1. Fasta file with human genome (build GRCh37) only chromosomes + MT, in human.fasta
2. Build colorspace reference using: "MosaikBuild -cs -fr human.fasta -oa human.dat" (works)
3. Make jump database using: "MosaikJump -ia human.cs.dat -mem 60 -hs 24 -out human.cs.24.jump"
What is the expected output? What do you see instead?
A jump database
What version of the product are you using? On what operating system?
Segmentation fault
Please provide any additional information below.
I have tried several combinations of hash size and memory usage with MosaikJump, however when the hash size gets to big (bigger than 14) the it results in a segmentation fault in the step 'writing jump positions database' at 0%. (So building and sorting the hash works, writing to file fails)
Used architecture: CPU 32 x 2.3 Ghz, RAM 128 GB
Original issue reported on code.google.com by FPRuz...@gmail.com on 11 May 2011 at 3:09
Original issue reported on code.google.com by
FPRuz...@gmail.com
on 11 May 2011 at 3:09