What steps will reproduce the problem?
MosaikBuild -fr testset_1510036reads.csfasta -fq testset_1510036reads.qual -out
test.dat -st solid
What is the expected output? What do you see instead?
Expected output: a succesfully build read archive.
Instead:
------------------------------------------------------------------------------
MosaikBuild 2.1.33 2011-11-08
Michael Stromberg & Wan-Ping Lee Marth Lab, Boston College Biology Department
------------------------------------------------------------------------------
- setting read group ID to: ZHZFAPMY18S
- setting sample name to: unknown
- setting sequencing technology to: solid
- parsing FASTA files:
reads: 0 |ERROR: The lengths of bases(50) and qualities(49) of Read
(2_38_510_F3) didn't match.
I checked length of bases and qualities for indicated read, but they do match
up (both 50).
What version of the product are you using? On what operating system?
Mosaik 2.1.33
Linux 2.6.18 x86_64
This is the same issue as reported in:
http://code.google.com/p/mosaik-aligner/issues/detail?id=72. With MosaikBuild
1.1.0021 there is no error (with same files and same command as specified
above).
Original issue reported on code.google.com by djiem...@gmail.com on 18 Apr 2012 at 9:26
Original issue reported on code.google.com by
djiem...@gmail.com
on 18 Apr 2012 at 9:26