Open GoogleCodeExporter opened 8 years ago
Note: the incorrectness of example 1, is that it does not put an '=' in the
mating... but it should... since they all have proper mates.
Original comment by earone...@gmail.com
on 29 Aug 2012 at 3:38
I think this is the reason why samtools will segfault. Samtools has no
problem with multiple mappings (bowtie works), as long as the mate pairing
information is correct ie: each read that has the mate pit set actually has a
mate, with an ID and an ISIZE and a POSITION.
I would like to use Mosaik as an alternative to bowtie for RNA seq... it is a
FAR better aligner for important data sets, bowtie misses up to 15% of
alternative isoform alignments, and Mosaik gets all of them. But the -om has
a number of issues.
Original comment by earone...@gmail.com
on 29 Aug 2012 at 7:33
Original issue reported on code.google.com by
earone...@gmail.com
on 29 Aug 2012 at 3:37