What steps will reproduce the problem?
1. I am using solid mate pair data..
2.
3.MosaikAligner -in reads.dat -out Aligned_mosaik_2.1.60.dat -ia
reference_cs.dat -ibs reference.dat -hs 15 -mm 6 -mhp 100 -act 25 -j
jumpdb_15.dat -p 8 -m all -gop 25 -annpe 2.1.26.pe.100.0065.ann -annse
2.1.26.se.100.005.ann
What is the expected output? What do you see instead?
0% [ ] -/var/spool/slurmd/job2208721/slurm_script: line 8: 23692 Segmentation fault (core dumped) MosaikAligner
What version of the product are you using? On what operating system?
mosaik version_2.1.60 on linux
Please provide any additional information below.
If i use solid fragment reads even then i get the error of base(50) and
quality(49 ) dont match, I am thinking if i need to process the reads of solid
before even doing the mosaik build?
what should i do????
Original issue reported on code.google.com by shumaila.sayyab on 14 Sep 2012 at 11:12
Original issue reported on code.google.com by
shumaila.sayyab
on 14 Sep 2012 at 11:12