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运行python3 BLAST.py 报错，如下： #11

Closed Silence566 closed 11 months ago

Silence566 commented 11 months ago
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➜ python3 BLAST.py objc[41126]: Class QT_ROOT_LEVEL_POOL__THESE_OBJECTS_WILL_BE_RELEASED_WHEN_QAPP_GOES_OUT_OF_SCOPE is implemented in both /Users/silence/Library/Python/3.8/lib/python/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore (0x10582f210) and /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore (0x10a03d390). One of the two will be used. Which one is undefined. objc[41126]: Class KeyValueObserver is implemented in both /Users/S/Library/Python/3.8/lib/python/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore (0x10582f238) and /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore (0x10a03d3b8). One of the two will be used. Which one is undefined. objc[41126]: Class RunLoopModeTracker is implemented in both /Users/S/Library/Python/3.8/lib/python/site-packages/PyQt5/Qt5/lib/QtCore.framework/Versions/5/QtCore (0x10582f288) and /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore (0x10a03d408). One of the two will be used. Which one is undefined. QSocketNotifier: Can only be used with threads started with QThread qt.qpa.drawing: Layer-backing is always enabled. QT_MAC_WANTS_LAYER/_q_mac_wantsLayer has no effect. [1] 41126 segmentation fault python3 BLAST.py

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python意外退出

Translated Report (Full Report Below)

Process: Python [39351] Path: /Library/Frameworks/Python.framework/Versions/3.8/Resources/Python.app/Contents/MacOS/Python Identifier: org.python.python Version: 3.8.10 (3.8.10) Code Type: X86-64 (Native) Parent Process: zsh [35129] Responsible: iTerm2 [13641] User ID: 501

Date/Time: 2023-07-25 13:47:09.6046 +0800 OS Version: macOS 12.6.7 (21G651) Report Version: 12 Bridge OS Version: 7.5 (20P5060) Anonymous UUID: D2CB0EE2-4AA5-1552-27CB-7A6841401DD5

Sleep/Wake UUID: 7DD22418-B350-4336-B13F-B5DDA2AD23AD

Time Awake Since Boot: 220000 seconds Time Since Wake: 13946 seconds

System Integrity Protection: disabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x000000000000006d Exception Codes: 0x0000000000000001, 0x000000000000006d Exception Note: EXC_CORPSE_NOTIFY

Termination Reason: Namespace SIGNAL, Code 11 Segmentation fault: 11 Terminating Process: exc handler [39351]

VM Region Info: 0x6d is not in any region. Bytes before following region: 140737487544211 REGION TYPE START - END [ VSIZE] PRT/MAX SHRMOD REGION DETAIL UNUSED SPACE AT START --->
VM_ALLOCATE 7ffffff3a000-7ffffff3b000 [ 4K] r-x/r-x SM=ALI

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 QtWidgets 0x10b0a2aa6 void QWidgetPrivate::invalidateBackingStore(QRect const&) + 70 1 QtWidgets 0x10bd30125 QWidgetPrivate::moveRect(QRect const&, int, int) + 1237 2 QtWidgets 0x10bd1ddbc QWidgetPrivate::setGeometry_sys(int, int, int, int, bool) + 2364 3 QtWidgets 0x10bd1dfc3 QWidget::setGeometry(QRect const&) + 227 4 QtWidgets 0x10beed1cf QTabWidget::setUpLayout(bool) + 383 5 QtWidgets.abi3.so 0x107c2f629 sipQTabWidget::showEvent(QShowEvent) + 121 6 QtWidgets 0x10bd210a5 QWidget::event(QEvent) + 1333 7 QtWidgets.abi3.so 0x107c2e18f sipQTabWidget::event(QEvent) + 191 8 QtWidgets 0x10bcd19e7 QApplicationPrivate::notify_helper(QObject, QEvent) + 247 9 QtWidgets 0x10bcd280c QApplication::notify(QObject, QEvent) + 508 10 QtWidgets.abi3.so 0x107d2d776 sipQApplication::notify(QObject, QEvent) + 230 11 QtCore 0x10c33a23a QCoreApplication::notifyInternal2(QObject, QEvent) + 170 12 QtWidgets 0x10bd1fb62 QWidgetPrivate::show_helper() + 418 13 QtWidgets 0x10bd20840 QWidgetPrivate::setVisible(bool) + 880 14 QtWidgets.abi3.so 0x107c2e6cf sipQTabWidget::setVisible(bool) + 111 15 QtWidgets 0x10bd1fcc5 QWidgetPrivate::showChildren(bool) + 69 16 QtWidgets 0x10bd1fa08 QWidgetPrivate::show_helper() + 72 17 QtWidgets 0x10bd20840 QWidgetPrivate::setVisible(bool) + 880 18 QtWidgets.abi3.so 0x107c8a33f sipQMainWindow::setVisible(bool) + 111 19 QtWidgets.abi3.so 0x107e35cdb meth_QWidget_show(_object, _object*) + 75 20 Python 0x10607e9a3 cfunction_call_varargs + 323 21 Python 0x10607e326 _PyObject_MakeTpCall + 374 22 Python 0x10615fc0c call_function + 652 23 Python 0x10615c19c _PyEval_EvalFrameDefault + 30364 24 Python 0x106160b54 _PyEval_EvalCodeWithName + 3268 25 Python 0x106154a60 PyEval_EvalCode + 48 26 Python 0x1061a56ae PyRun_SimpleFileExFlags + 910 27 Python 0x1061c5063 Py_RunMain + 2147 28 Python 0x1061c5573 pymain_main + 403 29 Python 0x1061c55cb Py_BytesMain + 43 30 dyld 0x1086d752e start + 462

Thread 1: 0 libsystem_pthread.dylib 0x7ff8166b7f48 start_wqthread + 0

Thread 2: 0 libsystem_pthread.dylib 0x7ff8166b7f48 start_wqthread + 0

Thread 3: 0 libsystem_kernel.dylib 0x7ff8166823da __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8166bca6f _pthread_condwait + 1249 2 libopenblas64.0.dylib 0x114a6626f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8166bc4e1 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8166b7f6b thread_start + 15

Thread 4: 0 libsystem_kernel.dylib 0x7ff8166823da __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8166bca6f _pthread_condwait + 1249 2 libopenblas64.0.dylib 0x114a6626f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8166bc4e1 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8166b7f6b thread_start + 15

Thread 5: 0 libsystem_kernel.dylib 0x7ff8166823da __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8166bca6f _pthread_condwait + 1249 2 libopenblas64.0.dylib 0x114a6626f blas_thread_server + 207 3 libsystem_pthread.dylib 0x7ff8166bc4e1 _pthread_start + 125 4 libsystem_pthread.dylib 0x7ff8166b7f6b thread_start + 15

Thread 6: 0 libsystem_pthread.dylib 0x7ff8166b7f48 start_wqthread + 0

Thread 7: 0 libsystem_kernel.dylib 0x7ff8166823da psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8166bca6f _pthread_cond_wait + 1249 2 libc++.1.dylib 0x7ff81661ad22 std::__1::condition_variable::wait(std::1::unique_lock&) + 18 3 onnxruntime_pybind11_state.so 0x10fe86f4b nsync::nsync_mu_semaphore_p_with_deadline(nsync::nsync_semaphores, timespec) + 395 4 onnxruntime_pybind11_state.so 0x10fe84067 nsync::nsync_cv_wait_with_deadline_generic(nsync::nsync_cvs, void, void ()(void), void ()(void), timespec, nsync::nsync_notes) + 391 5 onnxruntime_pybind11_state.so 0x10fe84891 nsync::nsync_cv_wait(nsync::nsync_cvs, nsync::nsync_mus) + 49 6 onnxruntime_pybind11_state.so 0x10fc6aebb onnxruntime::concurrency::ThreadPoolTempl::WorkerData::SetBlocked(std::1::function<bool ()>, std::1::function<void ()>) + 123 7 onnxruntime_pybind11_state.so 0x10fc6a76a onnxruntime::concurrency::ThreadPoolTempl::WorkerLoop(int) + 1226 8 onnxruntime_pybind11_state.so 0x10fc68870 onnxruntime::concurrency::ThreadPoolTempl::WorkerLoop(int, Eigen::ThreadPoolInterface) + 16 9 onnxruntime_pybind11_state.so 0x10fc71c64 onnxruntime::(anonymous namespace)::PosixThread::ThreadMain(void) + 20 10 libsystem_pthread.dylib 0x7ff8166bc4e1 _pthread_start + 125 11 libsystem_pthread.dylib 0x7ff8166b7f6b thread_start + 15

Thread 8: 0 libsystem_kernel.dylib 0x7ff8166823da psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8166bca6f _pthread_cond_wait + 1249 2 libc++.1.dylib 0x7ff81661ad22 std::__1::condition_variable::wait(std::1::unique_lock&) + 18 3 onnxruntime_pybind11_state.so 0x10fe86f4b nsync::nsync_mu_semaphore_p_with_deadline(nsync::nsync_semaphores, timespec) + 395 4 onnxruntime_pybind11_state.so 0x10fe84067 nsync::nsync_cv_wait_with_deadline_generic(nsync::nsync_cvs, void, void ()(void), void ()(void), timespec, nsync::nsync_notes) + 391 5 onnxruntime_pybind11_state.so 0x10fe84891 nsync::nsync_cv_wait(nsync::nsync_cvs, nsync::nsync_mus) + 49 6 onnxruntime_pybind11_state.so 0x10fc6aebb onnxruntime::concurrency::ThreadPoolTempl::WorkerData::SetBlocked(std::1::function<bool ()>, std::1::function<void ()>) + 123 7 onnxruntime_pybind11_state.so 0x10fc6a76a onnxruntime::concurrency::ThreadPoolTempl::WorkerLoop(int) + 1226 8 onnxruntime_pybind11_state.so 0x10fc68870 onnxruntime::concurrency::ThreadPoolTempl::WorkerLoop(int, Eigen::ThreadPoolInterface) + 16 9 onnxruntime_pybind11_state.so 0x10fc71c64 onnxruntime::(anonymous namespace)::PosixThread::ThreadMain(void) + 20 10 libsystem_pthread.dylib 0x7ff8166bc4e1 _pthread_start + 125 11 libsystem_pthread.dylib 0x7ff8166b7f6b thread_start + 15

Thread 9: 0 libsystem_kernel.dylib 0x7ff8166823da psynch_cvwait + 10 1 libsystem_pthread.dylib 0x7ff8166bca6f _pthread_cond_wait + 1249 2 libc++.1.dylib 0x7ff81661ad22 std::__1::condition_variable::wait(std::1::unique_lock&) + 18 3 onnxruntime_pybind11_state.so 0x10fe86f4b nsync::nsync_mu_semaphore_p_with_deadline(nsync::nsync_semaphores, timespec) + 395 4 onnxruntime_pybind11_state.so 0x10fe84067 nsync::nsync_cv_wait_with_deadline_generic(nsync::nsync_cvs, void, void ()(void), void ()(void), timespec, nsync::nsync_notes) + 391 5 onnxruntime_pybind11_state.so 0x10fe84891 nsync::nsync_cv_wait(nsync::nsync_cvs, nsync::nsync_mus) + 49 6 onnxruntime_pybind11_state.so 0x10fc6aebb onnxruntime::concurrency::ThreadPoolTempl::WorkerData::SetBlocked(std::1::function<bool ()>, std::1::function<void ()>) + 123 7 onnxruntime_pybind11_state.so 0x10fc6a76a onnxruntime::concurrency::ThreadPoolTempl::WorkerLoop(int) + 1226 8 onnxruntime_pybind11_state.so 0x10fc68870 onnxruntime::concurrency::ThreadPoolTempl::WorkerLoop(int, Eigen::ThreadPoolInterface) + 16 9 onnxruntime_pybind11_state.so 0x10fc71c64 onnxruntime::(anonymous namespace)::PosixThread::ThreadMain(void) + 20 10 libsystem_pthread.dylib 0x7ff8166bc4e1 _pthread_start + 125 11 libsystem_pthread.dylib 0x7ff8166b7f6b thread_start + 15

Thread 10: 0 libsystem_pthread.dylib 0x7ff8166b7f48 start_wqthread + 0

Thread 11: 0 libsystem_pthread.dylib 0x7ff8166b7f48 start_wqthread + 0

Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000065 rbx: 0x00007ff7ba67c228 rcx: 0x0000000000008400 rdx: 0x0000001700000000 rdi: 0x00007f78f9baf390 rsi: 0x00007ff7ba67c228 rbp: 0x00007ff7ba67c150 rsp: 0x00007ff7ba67c110 r8: 0x0000001700000000 r9: 0x0000000000000115 r10: 0x0000000000000192 r11: 0x0000000000000000 r12: 0x00007f78f9baf390 r13: 0x0000000000000000 r14: 0x000060000363d5c0 r15: 0x00007f78f9baf390 rip: 0x000000010b0a2aa6 rfl: 0x0000000000010246 cr2: 0x000000000000006d

Logical CPU: 2 Error Code: 0x00000004 (no mapping for user data read) Trap Number: 14

Thread 0 instruction stream: 66 2e 0f 1f 84 00 00 00-00 00 55 48 89 e5 5d e9 f.........UH..]. 86 fd ff ff 66 0f 1f 44-00 00 55 48 89 e5 41 57 ....f..D..UH..AW 41 56 41 54 53 48 83 ec-20 48 89 f3 49 89 ff 8b AVATSH.. H..I... 03 3b 43 08 0f 8f c5 00-00 00 8b 43 04 3b 43 0c .;C........C.;C. 0f 8f b9 00 00 00 e8 95-1c 3a 00 84 c0 0f 85 ac .........:...... 00 00 00 4d 8b 77 08 49-8b 46 28 b9 00 84 00 00 ...M.w.I.F(..... [23]48 08 81 f9 00 80 00-00 0f 85 90 00 00 00 4c #H.............L <== 89 f7 e8 f3 05 02 00 48-8b 40 08 48 8b 40 58 48 .......H.@.H.@XH 85 c0 74 7b 4c 8b 60 08-4d 85 e4 74 72 49 83 7c ..t{L.`.M..trI.| 24 10 00 74 6a 48 8b 03-48 8b 4b 08 48 89 4d d8 $..tjH..H.K.H.M. 48 89 45 d0 4c 89 ff e8-ce 27 02 00 48 89 45 c0 H.E.L....'..H.E. 48 89 55 c8 48 8d 7d d0-48 8d 75 c0 e8 8f 3c 3a H.U.H.}.H.u...<:

Binary Images: 0x10b08a000 - 0x10b4d0fff QtWidgets () /Users/USER/Library/Python/3.8/lib/python/site-packages/PyQt5/Qt5/lib/QtWidgets.framework/Versions/5/QtWidgets 0x10bcc4000 - 0x10c17bfff QtWidgets () <38e5a513-77f7-3a85-a246-cac37123e595> /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt6/Qt6/lib/QtWidgets.framework/Versions/A/QtWidgets 0x107bf4000 - 0x107e9ffff QtWidgets.abi3.so () <68096fd2-c152-35e1-8517-359c09208ace> /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt6/QtWidgets.abi3.so 0x10c2cc000 - 0x10c7d3fff QtCore () <0b33cbab-2386-3eda-8bfc-348ae7058464> /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/PyQt6/Qt6/lib/QtCore.framework/Versions/A/QtCore 0x10605c000 - 0x1062abfff org.python.python (3.8.10, (c) 2001-2019 Python Software Foundation.) <70430122-7408-3d45-851c-4239248ce8f6> /Library/Frameworks/Python.framework/Versions/3.8/Python 0x1086d2000 - 0x10873dfff dyld () <2517e9fe-884a-3855-8532-92bffba3f81c> /usr/lib/dyld 0x7ff8166b6000 - 0x7ff8166c1fff libsystem_pthread.dylib () /usr/lib/system/libsystem_pthread.dylib 0x7ff81667e000 - 0x7ff8166b5fff libsystem_kernel.dylib () /usr/lib/system/libsystemkernel.dylib 0x11471d000 - 0x118410fff libopenblas64.0.dylib () <5b570f78-6338-3d31-82f2-4001402d069e> /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/numpy/.dylibs/libopenblas64_.0.dylib 0x7ff81660f000 - 0x7ff816667fff libc++.1.dylib () /usr/lib/libc++.1.dylib 0x10f225000 - 0x11006cfff onnxruntime_pybind11_state.so () <19e7f2c2-fac7-307c-b878-a07599ac9f38> /Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/onnxruntime/capi/onnxruntime_pybind11_state.so 0x0 - 0xffffffffffffffff ??? (*) <00000000-0000-0000-0000-000000000000> ???

External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 2169 thread_create: 0 thread_set_state: 0

VM Region Summary: ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%) Writable regions: Total=845.6M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=845.6M(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Activity Tracing 256K 1 ColorSync 216K 24 Foundation 16K 1 Kernel Alloc Once 8K 1 MALLOC 276.4M 89 MALLOC guard page 32K 8 MALLOC_LARGE (reserved) 640K 1 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) ObjC additional data 15K 1 STACK GUARD 48K 12 Stack 21.6M 13 VM_ALLOCATE 118.3M 98 VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated) CTF 756 1 DATA 38.2M 489 DATA_CONST 18.6M 298 __DATA_DIRTY 636K 108 FONT_DATA 4K 1 LINKEDIT 697.8M 155 TEXT 514.4M 478 __UNICODE 592K 1 dyld private memory 1024K 1 mapped file 405.5M 52 shared memory 1272K 15 =========== ======= ======= TOTAL 2.5G 1850 TOTAL, minus reserved VM space 2.0G 1850

Full Report

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Bytes before following region: 140737487544211\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffff3a000-7ffffff3b000 [ 4K] r-x\/r-x SM=ALI ", "isCorpse" : 1, "exception" : {"codes":"0x0000000000000001, 0x000000000000006d","rawCodes":[1,109],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x000000000000006d"}, "termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"exc handler","byPid":39351}, "vmregioninfo" : "0x6d is not in any region. Bytes before following region: 140737487544211\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffff3a000-7ffffff3b000 [ 4K] r-x\/r-x SM=ALI ", "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":2169},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0}, "faultingThread" : 0, "threads" : 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gubeihc commented 11 months ago

没遇到过，建议使用python3.9版本 后续可能会更新到3.11

stevenlinfeng commented 11 months ago

PyQt5与PyQt6冲突了，卸载了PyQt5就行

Silence566 commented 11 months ago

试过了，没用，升级到python3.9好了