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gui11aume / mmp

MEM mapper prototype
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Pine bwt search FAIL #3

Closed ezorita closed 4 years ago

ezorita commented 5 years ago

Reference: willow:/home/rcortini/work/CRG/projects/sesame-manuscript/benchmark/data/membenchmark/smmfdp/GCA(...).fna

Input: willow:/home/rcortini/work/CRG/projects/sesame-manuscript/benchmark/data/membenchmark/mini.fasta

ezorita commented 5 years ago

Apparently mem loop have non-consistent position indices.

gui11aume commented 5 years ago

The issue is some overflow in the data structures of the index. We need to replace this part of the code to accommodate larger genomes. We will proceed to replacing it by some code written by @ezorita for another project.