Keep MEM seeds if result is better

gui11aume / mmp

MEM mapper prototype

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Keep MEM seeds if result is better #7

Closed gui11aume closed 5 years ago

gui11aume commented 5 years ago

When using skip seeds to improve the mapping quality of MEM seeds, it can be that the result is actually worse. We should keep the result of MEM seed in case that happens, and output this one instead.