guiblanchet / HMSC

Hierarchical modelling of species community
40 stars 13 forks source link

hmsc.OverPoisson.R model output can't be used with VariPart #29

Open javirudolph opened 5 years ago

javirudolph commented 5 years ago

While using abundance or density data, we use an overdispersad Poisson for hmsc model: protist_model <- hmsc(protist_hmsc, family = "overPoisson", niter = 10000, nburn = 2000, thin = 5)

Using the "overPoisson" will not give the structural output as a "probit".

The output structure is not correct and will not work with the VariPart() overPoisson_output