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guigolab / FA-nf

Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
GNU General Public License v3.0
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`ipscn (XXX)` terminated with an error exit status (231) #10

Open chklopp opened 1 year ago

chklopp commented 1 year ago

Hi,

I'm running FA-fn with singularity on our slurm cluster and all works fine but interproscan. All my jobs are terminating with error 231. I've check the iprscan database location and it seems fine

here are the directories iprscan/5.54-87.0/ cdd gene3d hamap panther pfam phobius pirsf pirsr prints prosite sfld smart superfamily tigrfam tmhmm then I find the version and then the files

in the tmp directory sub-directories are created node115_20230825_140419893_cnia node117_20230825_140420224_jhcc node117_20230825_140420250_jhss node117_20230825_140420419_2ouy node123_20230825_140420668_krc6 node119_20230825_140420686_a66r node123_20230825_140420872_306s node117_20230825_140420964_eui8 node116_20230825_140421391_gyd4

And in these sub-directories I find these directories jobCDD jobFinaliseInitialSteps jobHAMAP jobMatchLookup jobPanther jobPIRSF jobPRINTS-42.0 jobPrositeProfiles jobSMART jobTIGRFAM jobCoils jobGene3d jobLoadFromFasta jobMobiDBLite jobPfam jobPIRSR jobPrositePatterns jobSFLD jobSuperFamily-1.75 kvstore

containing result files

ls -ltr tmp/node115_20230825_140519691_kfws/jobTIGRFAM total 5784 10822 25 août 16:05 000000000001_000000000024.fasta 5899798 25 août 16:06 000000000001_000000000024.raw.out

Have you an idea where this error can come from? Where should I look for more insight? Do I need to increase memory?