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guigolab / bamstats

A command line tool to compute mapping statistics from a BAM file
BSD 3-Clause "New" or "Revised" License
22 stars 4 forks source link

Usage of the command line tool #28

Closed tushardave26 closed 4 years ago

tushardave26 commented 5 years ago

Hello,

Thank you for the tool.

Unfortunately, I am having trouble using the tool. I clone the repo but I am not able to run it. Can someone please provide examples of how can I use the tool?

Thanks.

Best, Tushar

emi80 commented 4 years ago

Hi @tushardave26, apologies for the late reply.

The best way to get started with the tool is to install a released version as explained in the README. You should set the BIN environment variable according to your need. For example, to install the Linux 64bit binary in ~/bin:

export VERSION=0.3.5 OS=linux ARCH=x86_64 BIN=~/bin
wget -O - https://github.com/guigolab/bamstats/releases/download/v${VERSION}/bamstats-v${VERSION}-${OS}-${ARCH}.tar.gz | tar xz -C ${BIN} bamstats

Best, Emilio

tushardave26 commented 4 years ago

Thanks, @emi80 for your response. I will give a shot to the solution that you suggested.