search

guigolab / ggsashimi

Command-line tool for the visualization of splicing events across multiple samples
MIT License
121 stars 42 forks source link

Integration in Galaxy #16

Closed bellenger-l closed 5 years ago

bellenger-l commented 5 years ago

Hello,

I really like your tool and I find it very useful. I wonder if you already thought about wrapping your ggsashimi into Galaxy ? I am currently working in the bioinformatics plateform ARTbio (see our github here ) and we work a lot with Galaxy by developping the framework but also different tools and wrapping them.

Would you agree to allow our platform to create the galaxy wrapper ? This would be an opportunity to provide a sashimi plot generator to Galaxy users.

Best, Lea

dgarrimar commented 5 years ago

Dear Lea,

It's great that you find our tool useful. Sure, we will be more than happy if you guys want to work on a Galaxy wrapper for ggsashimi. Please don't hesitate to contact us in case you need any help or further info.

thank you!

Diego

dgarrimar commented 5 years ago

Hi @bellenger-l, did you go on with this idea?

bellenger-l commented 5 years ago

Hello @dgarrimar ! Sorry I completely forgot to mention it ! I finish to wrap your tool into Galaxy : here is our development repository : https://github.com/ARTbio/tools-artbio/tree/master/tools/sashimi_plot I put your publication in citation. You can now also find your tool on the Galaxy toolshed

dgarrimar commented 5 years ago

Wow! that's really great Lea, thanks a lot!

bellenger-l commented 5 years ago

My pleasure ! For info : https://toolshed.g2.bx.psu.edu/view/artbio/sashimi_plot/64aa67b5099f

Best, Lea