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guigolab / ggsashimi

Command-line tool for the visualization of splicing events across multiple samples
MIT License
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IndexError: list index out of range #32

Closed archana433 closed 4 years ago

archana433 commented 4 years ago

./sashimi-plot.py -b input_bams.tsv -g Mus_musculus.GRCm38.99.gtf -M 10 -C 3 -O 3 --shrink --alpha 0.25 --base-size=20 --ann-height=4 --height=3 --width=18 -P palette.txt Traceback (most recent call last): File "./sashimi-plot.py", line 573, in for id, bam, overlay_level, color_level, label_text in read_bam_input(args.bam, args.overlay, args.color_factor, args.labels): File "./sashimi-plot.py", line 176, in read_bam_input bam = get_bam_path(f, line_sp[1]) IndexError: list index out of range

dgarrimar commented 4 years ago

Hi @archana433,

do you get any error when runnig the examples that we provide? Could you provide more details/some test dataset to try to reproduce your error?

thanks!

archana433 commented 4 years ago

i got error , it's the input_bam.tsv file. when i rewrite the tsv it worked.