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guigolab / ggsashimi

Command-line tool for the visualization of splicing events across multiple samples
MIT License
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Coordinates of splicing events #72

Closed nick294 closed 2 years ago

nick294 commented 3 years ago

Hi,

Is there an option to obtain the coordinates for the splicing events that ggsashimi is calling? I've managed to make the visualization, but cannot figure out the location of these events and was wondering if there is an easy way to extract this information, as well as the read coverage attributed to each splicing event shown in the visualization.

Thanks, Nick

emi80 commented 3 years ago

Hi @nick294, thanks for your question. You can use this command line option to write the junctions' list to a BED file. By the way, you can see all available options running ggsashimi with the --help option as stated in the usage section of the README

Best, Emilio

stale[bot] commented 3 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.