search

guigolab / ggsashimi

Command-line tool for the visualization of splicing events across multiple samples
MIT License
122 stars 42 forks source link

Help with example #88

Closed luisafmc closed 2 years ago

luisafmc commented 2 years ago

Hi, Thank you for developing this program. It's really useful.

I'm trying to run the example_run.sh and create the graph. The R script is successfully generated but when I try to run it in R Studio, the following error appears in the density_list

Error: unexpected symbol in:
"5,27041006,27041007,27041008,27041009,27041010,27041011,27041012,27041013,27041014,27041015,27041016,27041017,27041018,27041019,27041020,27041021,27041022,27041023,27041024,27041025,27041026,2
                density_list"

I realized that at the density_list the list begins blue and some numbers after, the color change. If there is a way that the python script could create the list by chunks instead of one. I'm not very good at python but I trying to figure out a way to change that in the original script.

If there is any idea I would appreciate it.

luisafmc commented 2 years ago

I solved the problem by using the env of conda

https://github.com/guigolab/ggsashimi/blob/master/conda/env-r3.4.1.yml

Probably was something related to the R version and the libraries.