The view attribute for the quantification process currently uses the annotation name or the RSEM transcript index name dinamically, e.g. GeneAnnotation or GeneTxDir.
To uniform the attribute value with other attributes in the pipeline.db file I propose to change the quantification view to GeneQuantifications for genes and TranscriptQuantifications for transcripts. This way it will have clearer semantics, it won't depend on the reference annotation name and will always be the same.
emi80
commented
3 years ago
The view attribute for the quantification process currently uses the annotation name or the RSEM transcript index name dinamically, e.g.
GeneAnnotationorGeneTxDir.To uniform the attribute value with other attributes in the
pipeline.dbfile I propose to change the quantification view toGeneQuantificationsfor genes andTranscriptQuantificationsfor transcripts. This way it will have clearer semantics, it won't depend on the reference annotation name and will always be the same.