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guigolab / lncATLAS

An easy to use web-based visualization tool to obtain useful information about expression localization of long non-coding class of RNAs
MIT License
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How lncATLAS choose the right isoform to represent one gene? #3

Closed CrescentLuo closed 6 years ago

CrescentLuo commented 6 years ago

Hi, thank you for providing such a good database, while using this database I'm a little confused about how lncATLAS decide which isoform is the best one to represent one lncRNA? As different isoforms may have different RCI and different localization, I think it is very important to figure out this point.

davidmasp commented 6 years ago

Hi, Thanks for your comment. lncATLAS currently uses gene-level quantifications so it's no possible to obtain the RCI (localisation) value for different isoforms of the same gene. David