Add gtftk merge_attr path into tables

guillaumecharbonnier / mw-lib

Metaworkflow library of generalised Snakemake rules

MIT License

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Add gtftk merge_attr path into tables #14

Closed SebastienNin closed 3 years ago

SebastienNin commented 3 years ago

Add IDT_for_Illumina_RNA_UD_Indexes_Set_A kit in src/snakemake/tables/adapter.tsv. Add gtftk gtf in src/snakemake/tables/gtf_ids.tsv and path to gtftk processed bam in src/snakemake/tables/star_idx_ids.tsv. Also add merge_gene_id_name in src/snakemake/tables/extra/protectedunderscores.tsv

SebastienNin commented 3 years ago

I kept your line from master, I still have trouble with indenting in my vim

guillaumecharbonnier commented 3 years ago

Does the additional changes from this PR are still relevant to merge, or the useful part is already merged to master from the grcm39 branch?

SebastienNin commented 3 years ago

You are right, the chanes are already done in the grcm39 branch