guillaumecharbonnier / mw-lib

Metaworkflow library of generalised Snakemake rules
MIT License
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Demultiplexing indexes troubleshooting #33

Closed SebastienNin closed 1 year ago

SebastienNin commented 1 year ago

I added the genome of Xenopus tropicalis in bowtie2 I modified the bcl2fastq rule to generate a file containing index sequences present in undetermined fastq. This is usefull to debug runs.