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guiwitz / napari-sediment

https://guiwitz.github.io/napari-sediment/napari_sediment.html
BSD 3-Clause "New" or "Revised" License
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Cannot save the corrected data #5

Closed Epta13 closed 8 months ago

Epta13 commented 8 months ago

In the first module - Sediment, tab Processing, Correct and save data. This operation gives an error: 'SedimentWidget' object has no attribute 'spin_chunksize'. The operation is not executed.

AttributeError Traceback (most recent call last) File ~.conda\envs\sediment\lib\site-packages\napari_sediment\sediment_widget.py:878, in SedimentWidget._on_click_batch_correct(self=) 864 with progress(total=0) as pbr: 865 pbr.set_description("Preprocessing full image") 867 correct_save_to_zarr( 868 imhdr_path=self.imhdr_path, 869 white_file_path=self.white_file_path, 870 dark_for_im_file_path=self.dark_for_im_file_path, 871 dark_for_white_file_path=self.dark_for_white_file_path, 872 zarr_path=self.export_folder.joinpath('corrected.zarr'), 873 band_indices=None, 874 min_max_bands=min_max_band, 875 background_correction=self.check_batch_white.isChecked(), 876 destripe=self.check_batch_destripe.isChecked(), 877 use_dask=self.check_use_dask.isChecked(), --> 878 chunk_size=self.spin_chunksize.value() self = <napari_sediment.sediment_widget.SedimentWidget object at 0x000001BD61186550> self.imhdr_path = WindowsPath('F:/HSI/Bremen/U-channel/slides_ArabianSea_240207-114854/capture/slides_ArabianSea_240207-114854.hdr') self.white_file_path = WindowsPath('F:/HSI/Bremen/U-channel/slides_ArabianSea_WR_240207-115838/capture/WHITEREF_slides_ArabianSea_WR_240207-115838.hdr') self.dark_for_im_file_path = WindowsPath('F:/HSI/Bremen/U-channel/slides_ArabianSea_240207-114854/capture/DARKREF_slides_ArabianSea_240207-114854.hdr') self.dark_for_white_file_path = WindowsPath('F:/HSI/Bremen/U-channel/slides_ArabianSea_WR_240207-115838/capture/DARKREF_slides_ArabianSea_WR_240207-115838.hdr') self.export_folder = WindowsPath('F:/HSI/Bremen/U-channel/Napari/Arabian_sea_slides') min_max_band = [396.0, 1007.0] self.check_batch_white = <PyQt5.QtWidgets.QCheckBox object at 0x000001BD66D9CF70> self.check_batch_destripe = <PyQt5.QtWidgets.QCheckBox object at 0x000001BD66D96040> self.check_use_dask = <PyQt5.QtWidgets.QCheckBox object at 0x000001BD66D96430> 879 ) 881 self.viewer.window._status_bar._toggle_activity_dock(False)

AttributeError: 'SedimentWidget' object has no attribute 'spin_chunksize'

guiwitz commented 8 months ago

This was a bug as the variable was misspelled. Should be fixed by 0cfec9a. Please just pip install again.