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guiwitz / napari-serialcellpose

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Serial cellpose on 3d images #12

Open rdemets opened 1 year ago

rdemets commented 1 year ago

Hi.

Is there any trick on how to use Serial Cellpose on 3d dataset ? When I load my 3d tif, only the first slice is being analyzed. Is this somehow related to the tifffile issue ? #9 Thanks for your help.

Regards, Richard.

guiwitz commented 1 year ago

Hi @rdemets serial-cellpose does not handle the 3D case at the moment as it was rather meant to facilitate batch processing of "simple" 2D images. I'll leave this issue open, as a reminder for me that it could be an interesting new feature.