guma44 / GEOparse

Python library to access Gene Expression Omnibus Database (GEO)
BSD 3-Clause "New" or "Revised" License
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silent mode not working. #29

Closed ppanteliadis closed 7 years ago

ppanteliadis commented 7 years ago

I've enable silent = True when calling GEOparse.get_GEO. but I still get the messages.

Parsing downloads/GSE72400_family.soft.gz:
 - DATABASE : GeoMiame
 - SERIES : GSE72400
 - PLATFORM : GPL18573
 - SAMPLE : GSM1861834
 - SAMPLE : GSM1861835
 - SAMPLE : GSM1861836
 - SAMPLE : GSM1861837
 - SAMPLE : GSM1861838
 - SAMPLE : GSM1861839
 - SAMPLE : GSM1861840
 - SAMPLE : GSM1861841
 - SAMPLE : GSM1861842
 - SAMPLE : GSM1861843
guma44 commented 7 years ago

Hi, Can you give more details? Eg. version you are using? In the new version there is logging used so the output will be different. It was also a know bug that in previous version silent mode was not working properly.

guma44 commented 7 years ago

See #19 for more details.

ppanteliadis commented 7 years ago

it’s version 0.1.10

On Jul 30, 2017, at 11:59 PM, Rafal Gumienny notifications@github.com wrote:

See #19 https://github.com/guma44/GEOparse/issues/19 for more details.

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guma44 commented 7 years ago

So as I said. See #19 for details. I am afraid that you have to upgrade to the version 1.0.0.