guokai8 scGSVA issues - Githubissues

guokai8 / scGSVA

scGSVA: Perform GSVA for single cell RNA seq

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Error when calculating GSVA based on UCell method

#28 YuxinYin0906 opened 1 month ago
1
Heatmap issues input is not a matrix, it should be a simple vector

#27 adc123456 opened 2 months ago
1
'ssgseaParam' is not an exported object from 'namespace:GSVA'

#26 FLY-Fiancee opened 3 months ago
3
update for compatibility with the new version of GSVA

#25 egeulgen closed 3 months ago
1
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.

#24 guokai8 opened 4 months ago
0
numbers of columns of arguments do not match

#23 jiangbonong opened 6 months ago
6
no slot of name "counts" for this object of class "Assay5"

#22 andreyurch opened 7 months ago
4
Discrepancy in results from v0.0.16 to 0.0.17

#21 DCarbonez opened 9 months ago
1
'group' column in scgsva result@obj

#20 MingchenInSZ opened 9 months ago
1
Cannot locate raw NES

#19 sierranishizaki opened 10 months ago
1
GSVA calculation takes extremely long

#18 jonrot1906 opened 10 months ago
4
MSIGB annotation

#17 guokai8 opened 11 months ago
0
About spatial transcriptomes

#16 orange-3711 opened 11 months ago
3
input<- input[tabulate(summary(input)$i) != 0, , drop = FALSE]

#15 yanwuanxin opened 1 year ago
0
gsva输出结果在转换成数据框时加上“check.names=FALSE”

#14 yanwuanxin opened 1 year ago
1
More pathways and databases?

#13 ryanhchung closed 1 year ago
2
Memory issue

#12 Cristinacondel1 opened 1 year ago
2
Input issue

#11 enBiter opened 1 year ago
2
buildAnnot error:Error in curl::curl_fetch_memory(url, handle = handle) : SSL certificate problem: certificate has expired

#10 Tycooner opened 1 year ago
1
buildAnnot error:Error in curl::curl_fetch_memory(url, handle = handle) : SSL certificate problem: certificate has expired

#9 LushengHuang closed 1 year ago
0
Get Error when running buildAnno; Error in curl::curl_fetch_memory(url, handle = handle) : Failure when receiving data from the peer

#8 guizhenz closed 1 year ago
0
Error after running parallel on HPC

#7 saeedfc opened 1 year ago
1
Use a custom gene set?

#6 heinin opened 1 year ago
6
Possible to integrate other pathway data bases such as Reactome, Wiki?

#5 charlesgwellem opened 2 years ago
1
heatmap shows all pathway but can not select average top upregulated or down regulated pathway

#4 henrywu0228 opened 2 years ago
1
Error in hclust(d, method = method) : size cannot be NA no

#3 zznx opened 2 years ago
2
at file ../Core/cholmod_dense.c, line 102

#2 zznx opened 2 years ago
4