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guoweilong / cgmaptools

toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
https://cgmaptools.github.io
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methylation-effective #41

Open YibingZeng opened 4 years ago

YibingZeng commented 4 years ago

By looking at the coverage analysis, you mentioned the methylation-effective several times, but could you be more specific about this definition. What is "methylation-effective"? A formula would be fine.

guoweilong commented 4 years ago

For "methylation-effetive coverage", it only counts reads supports the cytosine sites with genotype-calling as C or T, which is effectively contributed to methylatino estmation. For "Overall coverage", it counts all reads for all sites.

Best, Weilong

At 2020-10-16 22:46:43, "Yibing" notifications@github.com wrote:

By looking at the coverage analysis, you mentioned the methylation-effective several times, but could you be more specific about this definition. What is "methylation-effective"? A formula would be fine.

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