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guoweilong / cgmaptools

toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
https://cgmaptools.github.io
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CGmapMethInBins script line 66 have a little mistake #8

Closed qliugithub closed 6 years ago

qliugithub commented 6 years ago

First, It's a good software for DNA methylation analysis. but When I run the command 'cgmaptools mbin -i WG.CGmap.gz -B 500 -c 4 -f png -t WG -p WG > mbin.WG.data' , but display 'File "/public/home/qliu/bio_soft/cgmaptools/bin/CGmapMethInBins", line 66 print "\n[Error]:\n\t File cannot be open: ", fn' . I open the script of CGmapMethInBins, find line 66 was 'print "\n[Error]:\n\t File cannot be open: ", fn'。 but it use in python2 not in python3. finally I fix the conmmand with ''print("\n[Error]:\n\t File cannot be open: ", fn) " ,and then run without mistake report.

guoweilong commented 6 years ago

Great thanks for your comments. We have fixed related issue since v0.0.8.

You valuable feedback makes CGmapTools a better software!

Best, Weilong